PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORUFI01G22620.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family LBD
Protein Properties Length: 295aa    MW: 31930.8 Da    PI: 4.3907
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORUFI01G22620.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260102.43.9e-3222121199
           DUF260   1 aCaaCkvlrrkCakd.CvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkae 93 
                      +CaaCk+lrr+C+++ C lap+fpa+qp++++ v+++FG+++vl+l +++ +e  +d++ss+vyeAea+ rdPv G +gv+ +l+ ++ +++a+
  ORUFI01G22620.1  22 RCAACKFLRRACSPEeCRLAPHFPASQPERLQSVERVFGMRKVLELAHKAGPEYLDDILSSIVYEAEAWGRDPVWGPTGVVGALELEIGTARAD 115
                      6***********9877****************************************************************************** PP

           DUF260  94 lallke 99 
                      la+l+ 
  ORUFI01G22620.1 116 LAVLQG 121
                      *99876 PP

2DUF26079.94.3e-251292041791
           DUF260  17 vlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlk 91 
                      +lapyfpa q p++f nvh+lF+ +nvl++++++++eer+d+m+++vyeA+a+ardP yG++gv+++l+++l++++
  ORUFI01G22620.1 129 ALAPYFPAGQpPAQFGNVHRLFRLNNVLRMMEETRREERDDLMAAIVYEADAWARDPRYGVAGVVRSLTNELARVR 204
                      69******9978************************************************************9886 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089116.82321123IPR004883Lateral organ boundaries, LOB
PfamPF031956.6E-2822120IPR004883Lateral organ boundaries, LOB
PROSITE profilePS5089110.326114214IPR004883Lateral organ boundaries, LOB
PfamPF031951.1E-18129204IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 295 aa     Download sequence    Send to blast
MADPSRSTSS GAAKKPSPRN PRCAACKFLR RACSPEECRL APHFPASQPE RLQSVERVFG  60
MRKVLELAHK AGPEYLDDIL SSIVYEAEAW GRDPVWGPTG VVGALELEIG TARADLAVLQ  120
GQDQDQPPAL APYFPAGQPP AQFGNVHRLF RLNNVLRMME ETRREERDDL MAAIVYEADA  180
WARDPRYGVA GVVRSLTNEL ARVRLDEIAF HLLGTDETYD GYKEEDALAV DPVSGAQAGI  240
GVLGGSGADL QENTGILLGA DEPGPGELAV DPIKDVFDID RLLAVDDDLS SGTQP
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0033080.0AP003308.3 Oryza sativa Japonica Group genomic DNA, chromosome 1, BAC clone:B1129G05.
GenBankAP0149570.0AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.
GenBankCT8349910.0CT834991.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN043H23, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015638289.11e-112PREDICTED: uncharacterized protein LOC107278430
TrEMBLA0A0E0MY840.0A0A0E0MY84_ORYRU; Uncharacterized protein
STRINGORGLA01G0166300.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP2318866
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G65620.41e-21LBD family protein